Sunday 25 March 2012

LAB 1 MOHAMMAD SHAFIQ BIN ABDULLAH 113569


INTRODUCTION
Light microscopes, which we are using, use light to produce their images. Scanning light microscopes are called dissecting microscopes, and there are many kinds of light-transmission scopes, named for the way the light is delivered. Our lab has mostly bright field compound microscopes - specimens are seen against a bright background, and several (compound) magnifications can be chosen by rotating the objective lenses. The magnification of the objectives - commonly 4X, 10X, 40X, and 100X - are magnified again by the eyepiece or ocular lenses - usually 10X - so the total magnification for the different objectives are 40X (4x10), 100X (10x10), 400X (40x10), and 1000X (100x10).
 Microscope Handling
  1. Carry the microscope with both hands, one on the arm and the other under the base of the microscope.
  2. Go over to the microscope storage area and properly transport one microscope to your working area.
  3. Then, pick up a pair of scissors, newsprint, a slide, and a cover slip.
  4. Remove the dust cover and store it properly. Plug in the scope. Do not turn it on until told to do so.
  5. Examine the microscope and give the function of each of the parts listed on the right side of the diagram.

  1. eyepiece or ocular
  2. body tube
  3. fine adjustment knob
  4. nosepiece
  5. high power objective
  6.  low power objective
  7. diaphragm
  8. mirror (many   microscopes have a light instead)
  9. base
  10. coarse adjustment 
  11. arm
  12. stage clip 
  13. inclination joint

OBJECTIVE
Student should be able to:
1.      properly care for and confidently use microscope
2.      Identify the structure of microscope
3.      Use proper technique with oil immersion lens and wet mounts

RESULT
1)      Stained cell

FIGURE 1
 Penicillium spp
40x magnification

FIGURE 2
 Penicillium spp
100x magnification



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FIGURE 3
 Penicillium spp
400x magnification

2)      Wet mount

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FIGURE 4
Saccharomyces cerevisiae 
1000x magnification



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FIGURE 5
Lactobacillus fermentum
1000x magnification



DISCUSSION
Gram staining (or Gram's method) is a method of differentiating bacterial species into two large groups (Gram-positive and Gram-negative).It is based on the chemical and physical properties of their cell walls. Primarily, it detects peptidoglycan, which is present in a thick layer in Gram positive bacteria.A Gram positive results in a purple/blue color while a Gram negative results in a pink/red color.The Gram stain is almost always the first step in the identification of a bacterial organism, and is the default stain performed by laboratories over a sample when no specific culture is referred.
Penicillium is a genus of ascomycetous fungi of major importance in the natural environment as well as food and drug production. Members of the genus produce penicillin, a molecule that is used as an antibiotic, which kills or stops the growth of certain kinds of bacteria inside the body. The thallus (mycelium) typically consists of a highly branched network of multinucleate, septate, usually colorless hyphae. Many-branched conidiophores sprout on the mycelia, bearing individually constricted conidiospores. The conidiospores are the main dispersal route of the fungi, and often are green in color.Sexual reproduction involves the production of ascospores, commencing with the fusion of an archegonium and an antheridium, with sharing of nuclei. The irregularly distributed asci contain eight unicellular ascospores each.Penicillium is a gram-negative.




Saccharomyces cerevisiae is a species of yeast. It is perhaps the most useful yeast, having been instrumental to baking and brewing since ancient times. It is believed that it was originally isolated from the skin of grapes (one can see the yeast as a component of the thin white film on the skins of some dark-colored fruits such as plums; it exists among the waxes of the cuticle). It is one of the most intensively studied eukaryotic model organisms in molecular and cell biology, much like Escherichia coli as the model bacterium. It is the microorganism behind the most common type of fermentation. S. cerevisiae cells are round to ovoid, 5–10 micrometres in diameter. It reproduces by a division process known as budding.Many proteins important in human biology were first discovered by studying their homologs in yeast; these proteins include cell cycle proteins, signaling proteins, and protein-processing enzymes. The petite mutation in S. cerevisiae is of particular interest.Saccharomyces cerevisiae is currently the only yeast cell that is known to have Berkeley bodies present, which are involved in particular secretory pathways.Antibodies against S. cerevisiae are found in 60–70% of patients with Crohn's disease and 10–15% of patients with ulcerative colitis.
Lactobacillus, also called Döderlein's bacillus, is a genus of Gram-positive facultative anaerobic or microaerophilic rod-shaped bacteria. They are a major part of the lactic acid bacteria group, named as such because most of its members convert lactose and other sugars to lactic acid. In humans they are present in the vagina and the gastrointestinal tract, where they are symbiotic and make up a small portion of the gut flora. They are usually benign, except in the mouth where they have been associated with cavities and tooth decay (dental caries). Many species are prominent in decaying plant material. The production of lactic acid makes its environment acidic, which inhibits the growth of some harmful bacteria. Several members of the genus have had their genome sequenced. Some Lactobacillus species are used for the production of yogurt, cheese, sauerkraut, pickles, beer, wine, cider, kimchi, cocoa, and other fermented foods, as well as animal feeds, such as silage. Sourdough bread is made using a "starter culture," which is a symbiotic culture of yeast and lactic acid bacteria growing in a water and flour medium. Lactobacilli, especially L. casei and L. brevis, are some of the most common beer spoilage organisms. The species operate by lowering the pH of the fermenting substance by creating the lactic acid, neutralising it to the desired extent.

CONCLUSION
Now we know how to handle microscope properly and other precaution that we need to take care  about. It to avoid us from taken damage from microscope and spoil it because microscope have a sensitive part.
Use an oil immersion lens when you have a fixed (dead - not moving) specimen that is no thicker than a few micrometers. Even then, use it only when the structures you wish to view are quite small - one or two micrometers in dimension. Oil immersion is essential for viewing individual bacteria or details of the striations of skeletal muscle. It is nearly impossible to view living, motile protists at a magnification of 1000x, except for the very smallest and slowest. A disadvantage of oil immersion viewing is that the oil must stay in contact, and oil is viscous. A wet mount must be very secure to use oil. Oil immersion lenses are used only with oil, and oil can't be used with dry lenses, such as your 400x lens. Lenses of high magnification must be brought very close to the specimen to focus and the focal plane is very shallow, so focusing can be difficult. Oil distorts images seen with dry lenses, so once you place oil on a slide it must be cleaned off thoroughly before using the high dry lens again. Oil on non-oil lenses will distort viewing and possibly damage the coatings.
To use an oil immersion lens, first focus on the area of specimen to be observed with the high dry (400x) lens. Place a drop of immersion oil on the cover slip over that area, and very carefully swing the oil immersion lens into place. Focus carefully, preferably by observing the lens itself while bringing it as close to the cover slip as possible, then focusing by moving the lens away from the specimen. When in focus the lens nearly touches the cover slip. The focal plane is so narrow that it is very easy to focus right past it. If you are focusing toward the specimen, you can drive the lens right into it.
In a wet mount, the specimen is placed in a drop of water or other liquid held between the slide and the cover slip by surface tension. This method is commonly used, for example, to view microscopic organisms that grow in pond water or other liquid media, especially when studying their movement and behavior. It is also used to examine physiological liquids like blood, urine, saliva, semen, and vaginal discharge. Care must be taken to exclude air bubbles that would interfere with the viewing and hamper the organisms' movements. For pathological and biological research, the specimen usually undergoes a complex histological preparation that may involve cutting it into very thin sections with a microtome, fixing it to prevent decay, removing any water contained in it, staining specific parts of it, and impregnating or infiltrating it with some transparent solid substance. As part of this process the specimen usually ends up firmly attached to the slide.
REFERENCES
            http://faculty.fmcc.suny.edu/mcdarby/Pages/Lab%20Exercises/MICINTRO.htm
Campbell Biology (9th Edition),Jane B. Reece (Author), Lisa A. Urry (Author), Michael L. Cain (Author),         Steven A. Wasserman (Author), Peter V. Minorsky (Author), Robert B. Jackson (Author),2011


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